1 00:00:01 --> 00:00:01 Hello everyone. 2 00:00:02 --> 00:00:06 Welcome to the tutorial on Introduction to GChemPaint. 3 00:00:07 --> 00:00:10 In this tutorial, we will learn: 4 00:00:11 --> 00:00:12 *About GChemPaint 5 00:00:13 --> 00:00:15 *Uses and Benefits 6 00:00:16 --> 00:00:16 *Installation 7 00:00:17 --> 00:00:19 *Open a new file 8 00:00:20 --> 00:00:24 *Menubar, Toolbar and Status bar. 9 00:00:25 --> 00:00:27 We will also learn about: 10 00:00:28 --> 00:00:29 *Display area 11 00:00:30 --> 00:00:31 *Document properties 12 00:00:32 --> 00:00:33 *Using tool box and 13 00:00:34 --> 00:00:39 *Saving the drawing with extension .gchempaint. 14 00:00:40 --> 00:00:41 Here I am using 15 00:00:42 --> 00:00:46 Ubuntu Linux OS version. 12.04, 16 00:00:47 --> 00:00:52 GChemPaint version 0.12.10. 17 00:00:53 --> 00:00:58 To follow this tutorial you should have knowledge of, 18 00:00:59 --> 00:01:03 basics of Chemistry upto VIII standard. 19 00:01:04 --> 00:01:11 GChemPaint can be very easily installed using Ubuntu Software Center. 20 00:01:12 --> 00:01:15 For more information on Ubuntu software Center, 21 00:01:16 --> 00:01:22 please refer to Ubuntu Linux Tutorials on our website. 22 00:01:23 --> 00:01:25 What is GChemPaint? 23 00:01:26 --> 00:01:31 GChemPaint is a two dimensional chemical structure editor. 24 00:01:32 --> 00:01:36 It has a multiple document interface. 25 00:01:37 --> 00:01:39 GChemPaint allows you to, 26 00:01:40 --> 00:01:45 *Draw and display two dimensional chemical structures. 27 00:01:46 --> 00:01:49 *Drag and drop of templates 28 00:01:50 --> 00:01:54 *Change length, angle and width of the bonds 29 00:01:55 --> 00:02:02 *Use Chemical Calculator to calculate molecular weight of compounds. 30 00:02:03 --> 00:02:04 GChemPaint helps in: 31 00:02:05 --> 00:02:10 *Easy visualization of chemical structures 32 00:02:11 --> 00:02:16 *Converting two dimensional structures to three dimensional structures 33 00:02:17 --> 00:02:20 *Magnification of structures 34 00:02:21 --> 00:02:25 *Automatic and manual assignment of atoms. 35 00:02:26 --> 00:02:32 Let's first see how to open a new GChemPaint application. 36 00:02:33 --> 00:02:40 Click on Dash home >> Search bar appears >> In the Search bar type GChemPaint. 37 00:02:41 --> 00:02:45 Click on the GChemPaint icon. 38 00:02:46 --> 00:02:51 We can also open GChemPaint application from Terminal. 39 00:02:52 --> 00:02:57 Press Ctrl, Alt and T keys simultaneously, to open the Terminal. 40 00:02:58 --> 00:03:03 Type GChemPaint and press Enter. 41 00:03:04 --> 00:03:07 GChemPaint application opens. 42 00:03:08 --> 00:03:12 A typical GChemPaint window looks like this. 43 00:03:13 --> 00:03:14 This is the Menu-bar. 44 00:03:15 --> 00:03:21 GChempaint has a standard menu-bar like other window based applications. 45 00:03:22 --> 00:03:33 Menu bar contain menu items like File, Edit, View, Tools, Windows and Help options. 46 00:03:34 --> 00:03:40 Toolbar contains most frequently used commands as icons. 47 00:03:41 --> 00:03:44 There are icons to open a New file, 48 00:03:45 --> 00:03:47 Open existing file, 49 00:03:48 --> 00:03:52 Save a file and Print a file. 50 00:03:53 --> 00:03:55 This is the Display area. 51 00:03:56 --> 00:04:05 Display area shows the structures and the contents of the file that we draw and edit. 52 00:04:06 --> 00:04:13 We can drag and drop tools from toolbox into the Display area. 53 00:04:14 --> 00:04:19 Status-bar displays information about current GChemPaint activity. 54 00:04:20 --> 00:04:27 It also displays contextual information about menu items. 55 00:04:28 --> 00:04:32 Now I will explain about Document Properties. 56 00:04:33 --> 00:04:36 To open Document Properties window, 57 00:04:37 --> 00:04:38 click on File menu. 58 00:04:39 --> 00:04:42 Navigate to Properties and click on it. 59 00:04:43 --> 00:04:46 Document Properties window opens. 60 00:04:47 --> 00:04:52 I will drag the Document Properties window to maximize it. 61 00:04:53 --> 00:04:58 Document properties window has the following fields. 62 00:04:59 --> 00:05:05 Title- Let's type the title of the document as “Propane”. 63 00:05:06 --> 00:05:13 Author's Name- let's type author's name as Madhuri. 64 00:05:14 --> 00:05:16 Email– Let's leave it blank. 65 00:05:17 --> 00:05:22 History – This field shows the Creation date of the document. 66 00:05:23 --> 00:05:27 It also shows the Revision date of the document. 67 00:05:28 --> 00:05:34 This means, it also shows the next edited date of the document. 68 00:05:35 --> 00:05:38 Theme- let's leave this field as GChemPaint. 69 00:05:39 --> 00:05:45 Comments- In the Comments field, we can add text related to the document. 70 00:05:46 --> 00:05:50 Let's enter name of the compound and its formula. 71 00:05:51 --> 00:06:00 Propane CH3-CH2-CH3 72 00:06:01 --> 00:06:04 Let's click on Close button to close the window. 73 00:06:05 --> 00:06:08 Next let's learn about Toolbox. 74 00:06:09 --> 00:06:13 Toolbox contains buttons for different tools. 75 00:06:14 --> 00:06:19 Toolbox is displayed along with the active document window. 76 00:06:20 --> 00:06:24 Let's now draw structures using Toolbox buttons. 77 00:06:25 --> 00:06:29 Let's first draw the structure of propane. 78 00:06:30 --> 00:06:35 Propane is CH3-CH2-CH3 79 00:06:36 --> 00:06:41 Let's use Add a Chain tool from Tool box to draw a Carbon chain. 80 00:06:42 --> 00:06:44 Click on Add a Chain tool, 81 00:06:45 --> 00:06:47 and then click on Display area. 82 00:06:48 --> 00:06:52 A Carbon chain is drawn on the Display area. 83 00:06:53 --> 00:06:56 To change the orientation of the chain, 84 00:06:57 --> 00:06:59 click on Add a Chain tool. 85 00:07:00 --> 00:07:06 In the Display area, click and hold the left mouse button to orient the chain. 86 00:07:07 --> 00:07:14 Do not release the left mouse button until the direction of the chain is fixed. 87 00:07:15 --> 00:07:19 Release the left mouse button after fixing the direction. 88 00:07:20 --> 00:07:23 We see that carbon chain is drawn. 89 00:07:24 --> 00:07:32 Note, once we click on the Display area, the chain length and orientation of the chain are fixed. 90 00:07:33 --> 00:07:38 Let's now display atoms at each position on the chain. 91 00:07:39 --> 00:07:42 Here we have 3 positions to display atoms. 92 00:07:43 --> 00:07:46 Right click on the first position, 93 00:07:47 --> 00:07:48 a Sub-menu opens. 94 00:07:49 --> 00:07:58 Select Atom and then click on Display symbol, to display atoms at that position. 95 00:07:59 --> 00:08:03 Like wise, let's display atoms on all positions. 96 00:08:04 --> 00:08:06 Right click Select Atom. 97 00:08:07 --> 00:08:11 click on Display symbol. 98 00:08:12 --> 00:08:16 Here the structure of “Propane” is drawn. 99 00:08:17 --> 00:08:22 Let's next draw a pentane structure on the same window. 100 00:08:23 --> 00:08:25 Click on Add a Chain tool, 101 00:08:26 --> 00:08:28 then click on Display area. 102 00:08:29 --> 00:08:35 To increase the chain length, hold the left mouse button and drag the cursor. 103 00:08:36 --> 00:08:42 Change orientation in the desired direction and release the left mouse button. 104 00:08:43 --> 00:08:46 Let's display atoms on all positions. 105 00:08:47 --> 00:08:51 Here we have 5 positions to display atoms. 106 00:08:52 --> 00:08:57 To display atoms on the first position, right click. A sub-menu opens. 107 00:08:58 --> 00:09:02 Select Atoms and then click on Display symbol. 108 00:09:03 --> 00:09:16 Like wise let's display atoms on all positions. 109 00:09:17 --> 00:09:20 Here the structure of pentane is drawn. 110 00:09:21 --> 00:09:23 Let's now save the file. 111 00:09:24 --> 00:09:26 click on File Menu select Save as . 112 00:09:27 --> 00:09:29 Save As dialog box opens. 113 00:09:30 --> 00:09:34 For File type, click on the drop down arrow. 114 00:09:35 --> 00:09:38 Various save formats are seen. 115 00:09:39 --> 00:09:42 Select 2D Chemical structure. 116 00:09:43 --> 00:09:51 Type the file name as propane.gchempaint, 117 00:09:52 --> 00:09:54 and click on Save button. 118 00:09:55 --> 00:09:59 File is saved with .gchempaint extension. 119 00:10:00 --> 00:10:03 With this, we come to the end of this tutorial. 120 00:10:04 --> 00:10:05 Let's summarize. 121 00:10:06 --> 00:10:08 In this tutorial we have learnt, 122 00:10:09 --> 00:10:09 *About GChemPaint 123 00:10:10 --> 00:10:11 *Uses and Benefits 124 00:10:12 --> 00:10:13 *Installation 125 00:10:14 --> 00:10:15 *Open a new file 126 00:10:16 --> 00:10:19 *Menu-bar, Toolbar and Status bar 127 00:10:20 --> 00:10:22 We have also learnt about: 128 00:10:23 --> 00:10:24 *Display area 129 00:10:25 --> 00:10:25 *Document Properties 130 00:10:26 --> 00:10:27 *Using tool box and 131 00:10:28 --> 00:10:32 *Save the drawing with extension .gchempaint 132 00:10:33 --> 00:10:35 As an assignment I would like you to: 133 00:10:36 --> 00:10:40 1. Draw structures of n-hexane and n-octane 134 00:10:41 --> 00:10:42 2. Change the orientation 135 00:10:43 --> 00:10:46 3. Display atoms on each position 136 00:10:47 --> 00:10:52 Output of the assignment should look like this. 137 00:10:53 --> 00:10:56 Watch the video available at this URL: 138 00:10:57 --> 00:10:59 It summarizes the Spoken Tutorial project. 139 00:11:00 --> 00:11:04 If you do not have good bandwidth, you can download and watch it. 140 00:11:05 --> 00:11:06 The Spoken Tutorial Project Team: 141 00:11:07 --> 00:11:09 Conducts workshops using spoken tutorials 142 00:11:10 --> 00:11:13 Gives certificates to those who pass an online test. 143 00:11:14 --> 00:11:20 For more details, please write to contact@spoken-tutorial.org. 144 00:11:21 --> 00:11:25 Spoken Tutorial Project is a part of the Talk to a Teacher project. 145 00:11:26 --> 00:11:33 It is supported by the National Mission on Education through ICT, MHRD, Government of India. 146 00:11:34 --> 00:11:39 More information on this Mission is available at this link. 147 00:11:40 --> 00:11:45 This is Madhuri Ganpathi from IIT Bombay signing off. Thank you for joining.